PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0891s0022.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 299aa    MW: 34428.8 Da    PI: 8.8354
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0891s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.5e-18157246198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v +  +l lp  f+ ++ ++  e+++++lede+g+++e  +   +k+ +  l++GWk+F+ +++L++gD ++F+l++ ++f
  Cagra.0891s0022.1.p 157 FVKSMLRSHVYSCFWLGLPSGFCVDNFSE--ETIEVVLEDEEGEEYEAVY--IGKRTG--LSGGWKRFALDHKLDDGDALLFELVEPKRF 240
                          89************************866..6789***************..555544..***********************9987777 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            ++ vfr
  Cagra.0891s0022.1.p 241 --KIYVFR 246
                          ..888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-23150248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-20150247IPR015300DNA-binding pseudobarrel domain
CDDcd100174.02E-18155246No hitNo description
SMARTSM010191.1E-25157248IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098157248IPR003340B3 DNA binding domain
PfamPF023625.9E-17157247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAYEEARKLR LQENLKRFQV FPFHRCLVFF FSSFSDSFLT IESQDLGISQ ISKALLTQIP  60
KKTLQRNPRP IDKALFATAE PRRSSRVRTP ISSYRDDVDV DTGPTLNLRR SRRNSSWDSY  120
IARPKHECKF ASYEEKVGAL KAAEEFQSRL ESPHPSFVKS MLRSHVYSCF WLGLPSGFCV  180
DNFSEETIEV VLEDEEGEEY EAVYIGKRTG LSGGWKRFAL DHKLDDGDAL LFELVEPKRF  240
KIYVFRGNES ANLTSKEKRV RARQSEEEDK DVEESGDEGD SSRATKRLSS RLLRKRKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192282e-71AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBankCP0026882e-71CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280945.10.0hypothetical protein CARUB_v10026947mg
SwissprotQ9FHB21e-126Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLR0GRK80.0R0GRK8_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0008_22961e-131(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-105B3 family protein